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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_16938582_16939175_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
16938582 - 16939175
Intron Length:
594

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGAGCT
5'SS Class:
strong_major
3'SS Sequence:
TAATGTCTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
CTCTCTTTAAAT
Flanking Amino Acid:
FYKYQPIDLVRKYFGEKIGL
Intron Amino Acid Position:
344

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.8
77.7
30.1
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
77.7
0.62
0.9
74
41
Minor 5ss
27.6
-2.6
3.3
39.2
46.2
Minor BPS
71.5
0.75
1.4
80.63
41.5

Associated Gene:

Gene:
ANO1
Ensembl Gene ID:
ENSAPLG00000004437
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028657
16920139 - 16957900
37762
ENSAPLT00000026662
16916959 - 16944294
27336
ENSAPLT00000004623
16916959 - 16962380
45422