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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_16939241_16942404_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16939241 - 16942404
Intron Length:
3164

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTGGA
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTTTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAC
U12 Branch Point Sequence:
TTCTCTTTTACA
Flanking Amino Acid:
GENVEPNDRKLLCEEWASYG
Intron Amino Acid Position:
323

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.81
0.9
75.2
35.1
Major BPS
86.5
0.91
0.8
77.4
37.4
Major PPT
91.6
0.94
0.6
87
23.6
Minor 5ss
33.8
-1.8
3.2
40.4
40
Minor BPS
70.7
0.65
1.6
78.99
37.5

Associated Gene:

Gene:
ANO1
Ensembl Gene ID:
ENSAPLG00000004437
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028657
16920139 - 16957900
37762
ENSAPLT00000026662
16916959 - 16944294
27336
ENSAPLT00000004623
16916959 - 16962380
45422