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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_16944171_16949659_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
16944171 - 16949659
Intron Length:
5489

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAT|GTAAATAAT
5'SS Class:
major
3'SS Sequence:
TTTATTTTTCAAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
ATGTCTTTATTT
Flanking Amino Acid:
KTRSTIVSTVWITSLLANGV
Intron Amino Acid Position:
252

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.4
0.65
1
82.4
29.8
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
80.2
0.68
1
79.3
38.2
Minor 5ss
39.2
-1.2
3
55.3
42.3
Minor BPS
65
0.55
1.5
77.76
39.5

Associated Gene:

Gene:
ANO1
Ensembl Gene ID:
ENSAPLG00000004437
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028657
16920139 - 16957900
37762