About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_1705489_1706945_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1705489 - 1706945
Intron Length:
1457

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAGGTGTG
5'SS Class:
major
3'SS Sequence:
TTATTTTCTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TATCTTTTTATT
Flanking Amino Acid:
LDSDYERLEHGTLFEDKGDK
Intron Amino Acid Position:
168

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.2
0.67
1
68.8
42.2
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
84.2
0.77
0.7
78.1
36.2
Minor 5ss
35
-1.7
3.5
45
44.5
Minor BPS
56.2
0.28
1.6
73.66
37.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026666
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025002
1692647 - 1720953
28307