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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_1709243_1714704_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1709243 - 1714704
Intron Length:
5462

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTACA
5'SS Class:
strong_major
3'SS Sequence:
GTTTTTGTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
TTATCCTTAAGA
Flanking Amino Acid:
QPDAISSLLNEIERLESKLN
Intron Amino Acid Position:
289

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
1
82.7
29.2
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
86.7
0.82
0.8
84.6
36
Minor 5ss
38.4
-1.3
2.7
48.5
40.3
Minor BPS
78.2
0.88
1.5
84.37
35.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026666
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025002
1692647 - 1720953
28307