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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_17105999_17108982_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17105999 - 17108982
Intron Length:
2984

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAAGTTTC
5'SS Class:
strong_major
3'SS Sequence:
GTTTGCTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTAAT
U12 Branch Point Sequence:
CTTTCCTAATCT
Flanking Amino Acid:
MNKRGRLYASENYNTECEFV
Intron Amino Acid Position:
115

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
82.6
31.3
Major BPS
81.9
0.79
0.9
80.1
30
Major PPT
82.6
0.73
0.9
73.4
41.9
Minor 5ss
45.2
-0.5
2.8
62.5
42.2
Minor BPS
63.3
0.5
2
83.49
43.8

Associated Gene:

Gene:
FGF3
Ensembl Gene ID:
ENSAPLG00000004435
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004547
17104056 - 17109315
5260