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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_17136651_17137432_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
17136651 - 17137432
Intron Length:
782

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGCCGG
5'SS Class:
major
3'SS Sequence:
GTCTCCTATGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCCCAT
U12 Branch Point Sequence:
TCTCCCTGATTT
Flanking Amino Acid:
IDGIHSENRYSLLEISPVER
Intron Amino Acid Position:
102

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.8
0.37
1.1
48.6
47.6
Major BPS
72.3
0.55
1.2
80.7
33.2
Major PPT
71.2
0.48
0.9
66.3
34.7
Minor 5ss
39.5
-1.2
3.1
53.3
44.5
Minor BPS
55.9
0.26
1.8
74.32
42.6

Associated Gene:

Gene:
FGF4
Ensembl Gene ID:
ENSAPLG00000022440
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044041
17136347 - 17142016
5670