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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_17137537_17139457_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17137537 - 17139457
Intron Length:
1921

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCT|GTAAGTAGC
5'SS Class:
major
3'SS Sequence:
CTTTTCATTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTCCTTTTCATT
Flanking Amino Acid:
MNSRGKLYGSTHFNDECKFK
Intron Amino Acid Position:
137

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.6
0.58
1.1
69.5
41.3
Major BPS
100
1.24
0.5
100
0
Major PPT
87.8
0.85
0.7
85.6
27.3
Minor 5ss
39
-1.2
2.8
55.8
41.5
Minor BPS
52.8
0.17
1.7
71.97
40.1

Associated Gene:

Gene:
FGF4
Ensembl Gene ID:
ENSAPLG00000022440
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044041
17136347 - 17142016
5670