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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_1714810_1717695_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1714810 - 1717695
Intron Length:
2886

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTAGC
5'SS Class:
strong_major
3'SS Sequence:
TATTCTTTCTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTTCTTTCATT
Flanking Amino Acid:
NLKDDTRQDNLRRHPSGSSG
Intron Amino Acid Position:
324

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
1
78.2
36.4
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
81.8
0.72
0.7
81.3
30.3
Minor 5ss
38.5
-1.3
2.8
50.4
39.2
Minor BPS
73.9
0.83
1.6
91.31
32.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026666
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025002
1692647 - 1720953
28307