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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_17164211_17164299_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
17164211 - 17164299
Intron Length:
89

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTGAGTAGC
5'SS Class:
major
3'SS Sequence:
CTCTGCCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GGCTCAC
U12 Branch Point Sequence:
CTGGGCTCACGC
Flanking Amino Acid:
VDAAGSQSPHSLLEIRAVAV
Intron Amino Acid Position:
82

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72
0.52
1
66.3
39.5
Major BPS
52.1
0.05
1.3
57
41.8
Major PPT
72
0.49
0.8
65.4
30.5
Minor 5ss
32.8
-2
2.7
42.4
38.3
Minor BPS
35.6
-1.1
2.2
41.22
45.5

Associated Gene:

Gene:
FGF19
Ensembl Gene ID:
ENSAPLG00000004286
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004392
17162916 - 17167936
5021