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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_17172996_17175060_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17172996 - 17175060
Intron Length:
2065

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGGGG
5'SS Class:
strong_major
3'SS Sequence:
TATAAATTCCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTCTTATAAATT
Flanking Amino Acid:
ARHGARVGAEIGSYLGFALT
Intron Amino Acid Position:
59

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
67.8
43.5
Major BPS
100
1.24
0.5
100
0
Major PPT
65
0.34
1
55.5
44.1
Minor 5ss
28.6
-2.5
3.5
37.8
47.1
Minor BPS
54.7
0.23
1.9
76.06
41.3

Associated Gene:

Gene:
LTO1
Ensembl Gene ID:
ENSAPLG00000004024
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004136
17172707 - 17176939
4233