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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_17175132_17176450_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
17175132 - 17176450
Intron Length:
1319

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGTTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTTTTGTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTATTATTG
Flanking Amino Acid:
LLSKCTDEKNSKKRKALDSL
Intron Amino Acid Position:
82

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.9
1.01
0.8
88.6
27.1
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
88.5
0.87
0.7
84.9
29.9
Minor 5ss
42.7
-0.8
3.4
64.1
47.4
Minor BPS
55.6
0.04
1.9
67.89
40.2

Associated Gene:

Gene:
LTO1
Ensembl Gene ID:
ENSAPLG00000004024
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004136
17172707 - 17176939
4233