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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_1717890_1718231_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1717890 - 1718231
Intron Length:
342

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAACTGA
5'SS Class:
major
3'SS Sequence:
CTGTATCTTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTGTAAT
U12 Branch Point Sequence:
TTTTCTGTATCT
Flanking Amino Acid:
NHFTSKNDENRSFEGTLYKR
Intron Amino Acid Position:
388

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
68.3
39.5
Major BPS
66.7
0.41
1.4
69.7
44.2
Major PPT
74.5
0.55
0.9
66.1
40.5
Minor 5ss
42.6
-0.8
3
56.2
47.9
Minor BPS
60.5
0.41
2.2
87.39
38.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026666
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025002
1692647 - 1720953
28307