Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_1718320_1720441_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1718320 - 1720441

Intron Length:

2122

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAAACCT

5'SS Class:

strong_major

3'SS Sequence:

TTATGTCATCTAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

TTATTTTTATTT

Flanking Amino Acid:

WFVLDVTKHQLRYYDSGEDT

Intron Amino Acid Position:

418

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.9

0.73

71.4

38.4

Major BPS

96.5

1.15

0.6

34.2

Major PPT

0.47

63.4

Minor 5ss

-1.8

3.3

49.1

46.6

Minor BPS

64.7

0.54

1.5

79.8

36.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000026666

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000025002

1692647 - 1720953

28307