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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_17191794_17197287_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17191794 - 17197287
Intron Length:
5494

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTAAGTGAC
5'SS Class:
strong_major
3'SS Sequence:
TAATCTTCTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TTCCATTTAATC
Flanking Amino Acid:
FLSQVIKCDPDCLRACQEQI
Intron Amino Acid Position:
103

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.6
0.86
0.9
76.2
33.5
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
74.6
0.55
0.9
66.8
40
Minor 5ss
33.5
-1.9
3.2
44.3
43.6
Minor BPS
61.2
0.33
1.5
68.44
37.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023856
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019831
17191410 - 17203095
11686