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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_17197437_17202835_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
17197437 - 17202835
Intron Length:
5399

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGAGCC
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTCATACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
TCTTTCTTCATA
Flanking Amino Acid:
AQTFVALCATDVKFISNPPS
Intron Amino Acid Position:
53

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
0.9
68.6
34.6
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
85.4
0.8
0.8
80.9
30.1
Minor 5ss
37.8
-1.4
3.3
51.1
45.6
Minor BPS
64.5
0.45
1.7
74.1
38.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023856
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019831
17191410 - 17203095
11686