Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_17292527_17298085_R

Intron Information:

Intron Rank:

129069

Intron Class:

major

Intron Phase:

Intron Coordinates:

17292527 - 17298085

Intron Length:

5559

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACA|GTGAGTATT

5'SS Class:

major

3'SS Sequence:

TATCTTGGTACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCTTTAT

U12 Branch Point Sequence:

TGCTCTTTATCT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

76.2

0.62

32.8

Major BPS

83.9

0.84

73.9

41.3

Major PPT

73.9

0.54

68.4

41.9

Minor 5ss

38.4

-1.3

41.2

Minor BPS

67.5

0.63

1.6

80.3

41.9

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000016602

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000045454

17278614 - 17298168

19555