About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_17318487_17325063_R

Intron Information:

Intron Rank:
131960
Intron Class:
major
Intron Phase:
Intron Coordinates:
17318487 - 17325063
Intron Length:
6577

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCAGTTTG
5'SS Class:
strong_major
3'SS Sequence:
TTCCCTCCTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
CTTGTTTCATCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
1.2
78.8
38.3
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
82.5
0.73
0.7
77.1
24.9
Minor 5ss
39.2
-1.2
2.8
49.7
46.6
Minor BPS
47.3
-0.1
1.9
66.8
44.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018229
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023405
17317080 - 17325118
8039