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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_17458207_17499044_R

Intron Information:

Intron Rank:
140689
Intron Class:
major
Intron Phase:
Intron Coordinates:
17458207 - 17499044
Intron Length:
40838

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTGAGGAAC
5'SS Class:
major
3'SS Sequence:
TCTGTATTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
ATTTCTGTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.5
0.65
1
69.5
36.8
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
84
0.76
0.8
81.1
35.5
Minor 5ss
27.6
-2.6
3
34.7
41.5
Minor BPS
52
0.14
2.2
77.64
39.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023043
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046479
17458061 - 17499714
41654