Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_17536512_17539264_R

Intron Information:

Intron Rank:

146380

Intron Class:

major

Intron Phase:

Intron Coordinates:

17536512 - 17539264

Intron Length:

2753

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAGGTAGT

5'SS Class:

strong_major

3'SS Sequence:

TTTTGGTGTCCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTCAT

U12 Branch Point Sequence:

CTTTTCATATTT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

87.4

0.88

0.9

81.8

38.5

Major BPS

100

1.24

0.5

100

Major PPT

77.3

0.61

69.2

46.1

Minor 5ss

36.1

-1.6

3.1

51.1

45.4

Minor BPS

0.21

1.9

41.3

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000026106

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000019876

17536363 - 17539806

3444