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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_17559840_17560276_R

Intron Information:

Intron Rank:
146381
Intron Class:
major
Intron Phase:
Intron Coordinates:
17559840 - 17560276
Intron Length:
437

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTGAC
5'SS Class:
strong_major
3'SS Sequence:
TTCTGTTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTATGTAGACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.8
1.08
0.7
84.9
25
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
88.4
0.86
0.7
83.2
32
Minor 5ss
33
-1.9
3.2
42.9
44.7
Minor BPS
47.2
-0.1
2.4
75.05
42.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026106
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022281
17559572 - 17560721
1150