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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_17618646_17621348_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17618646 - 17621348
Intron Length:
2703

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTCAT
5'SS Class:
strong_major
3'SS Sequence:
ATATTTCTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAA
U12 Branch Point Sequence:
TAATACTTAAAT
Flanking Amino Acid:
NLRAFAGILVVVFYAFAITG
Intron Amino Acid Position:
574

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.2
0.9
0.9
79.7
35.3
Major BPS
83
0.82
0.8
83.9
25.3
Major PPT
82.6
0.73
0.9
74.2
40.6
Minor 5ss
36
-1.6
3
47.1
42.6
Minor BPS
67.8
0.64
1.6
81.2
39.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003454
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003563
17610764 - 17642712
31949