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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_17621421_17622310_R

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17621421 - 17622310
Intron Length:
890

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGTTTGCT
5'SS Class:
major
3'SS Sequence:
TGCTTTGTTTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATGTAAT
U12 Branch Point Sequence:
TGCATATCAAAT
Flanking Amino Acid:
RFLRIIPNMKFMALVVTTLL
Intron Amino Acid Position:
550

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.8
0.56
1
69.5
34.6
Major BPS
75.6
0.64
1.1
75.7
36.5
Major PPT
78.3
0.64
0.9
76.8
37.4
Minor 5ss
36
-1.6
3.2
50.4
46
Minor BPS
44.4
-0.3
1.9
60.26
42.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003454
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003563
17610764 - 17642712
31949