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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_17622411_17623883_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
17622411 - 17623883
Intron Length:
1473

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTATGTAAT
5'SS Class:
strong_major
3'SS Sequence:
CCATCTTCCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
GTTTCTCTGACT
Flanking Amino Acid:
FAEYGFPHPGWRPEFMGLLS
Intron Amino Acid Position:
516

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.77
0.9
81.4
31.6
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
69
0.43
0.8
61.6
34.7
Minor 5ss
43.6
-0.7
2.6
56.3
42.5
Minor BPS
66.9
0.61
1.6
84.88
35.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003454
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003563
17610764 - 17642712
31949