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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_17623934_17624613_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17623934 - 17624613
Intron Length:
680

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGATAT
5'SS Class:
strong_major
3'SS Sequence:
CTCCTATCTAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTGAC
U12 Branch Point Sequence:
CTTTCTTTGACT
Flanking Amino Acid:
FDGLLTAILLVLEIATFAEY
Intron Amino Acid Position:
500

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.9
79.5
29.4
Major BPS
74.1
0.6
1
66.7
39.9
Major PPT
67.4
0.39
1
67
32
Minor 5ss
39.8
-1.1
3.2
53.2
45
Minor BPS
81.6
1.08
1
90.81
33.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003454
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003563
17610764 - 17642712
31949