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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_17624743_17624845_R

Intron Information:

Intron Rank:
15
Intron Class:
major_hybrid
Intron Phase:
0
Intron Coordinates:
17624743 - 17624845
Intron Length:
103

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGATGT
5'SS Class:
strong_major
3'SS Sequence:
GGTGGTGGTGAAG|G
3'SS Class:
major_hybrid
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TTTTTCTTATTT
Flanking Amino Acid:
PSERDDFFLGAINCFFILYY
Intron Amino Acid Position:
457

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
1
72.5
39.9
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
48.6
-0
1.2
44.5
45.9
Minor 5ss
39.2
-1.2
3.1
48.2
47.4
Minor BPS
75.8
0.89
1.5
91.23
32.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003454
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003563
17610764 - 17642712
31949