Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_17624906_17625247_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

17624906 - 17625247

Intron Length:

342

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TGC|GTAAGTAAG

5'SS Class:

major

3'SS Sequence:

CTTGTCTTTTAAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCATAAA

U12 Branch Point Sequence:

TTGTCTTTTAAG

Flanking Amino Acid:

VALANIVSICVVLVMDADKQ

Intron Amino Acid Position:

437

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

69.9

0.47

1.3

68.8

43.8

Major BPS

0.4

1.1

66.5

36.3

Major PPT

75.4

0.57

79.1

33.2

Minor 5ss

-1.6

2.7

37.9

Minor BPS

55.8

0.04

1.9

64.21

43.7

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000003454

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000003563

17610764 - 17642712

31949