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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_17626089_17627251_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17626089 - 17627251
Intron Length:
1163

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAGGAGCT
5'SS Class:
major
3'SS Sequence:
CTTTCATGTGAAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTAAT
U12 Branch Point Sequence:
TTCTCTTTCATG
Flanking Amino Acid:
DSRCKQAIMRSLKIWSGDHL
Intron Amino Acid Position:
368

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72
0.52
1.1
63.4
41.5
Major BPS
85.7
0.89
0.8
84
22.2
Major PPT
66.8
0.38
1.1
68
36.9
Minor 5ss
31.2
-2.1
3.6
39.5
45.9
Minor BPS
59.8
0.16
1.8
66.31
42.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003454
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003563
17610764 - 17642712
31949