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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_17632097_17635185_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17632097 - 17635185
Intron Length:
3089

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACCAAT
5'SS Class:
major
3'SS Sequence:
TCTCTCTGACTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
ATCTCTCTGACT
Flanking Amino Acid:
FAMLLFARTKDGQQDKEWVG
Intron Amino Acid Position:
231

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.5
0.67
1.1
77.9
38.6
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
67.6
0.4
1
62.7
38.4
Minor 5ss
46.6
-0.3
2.7
66
45.2
Minor BPS
61.1
0.43
1.7
77.99
38.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003454
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003563
17610764 - 17642712
31949