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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_17644602_17647120_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17644602 - 17647120
Intron Length:
2519

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATGTC
5'SS Class:
strong_major
3'SS Sequence:
TCTATTTATCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTCTATTTATCC
Flanking Amino Acid:
SWQFRCIDKQTSPEVAWVLV
Intron Amino Acid Position:
691

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.5
0.88
0.9
82
29.3
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
80.7
0.69
0.9
73.4
40.9
Minor 5ss
36.6
-1.5
3.4
52
45.2
Minor BPS
58.4
0.24
1.8
70.85
40.8

Associated Gene:

Gene:
NADSYN1
Ensembl Gene ID:
ENSAPLG00000003062
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003162
17644520 - 17662887
18368