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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_17645488_17647120_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17645488 - 17647120
Intron Length:
1633

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATGTC
5'SS Class:
strong_major
3'SS Sequence:
GTATTTATTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
CTCTATTTAAAG
Flanking Amino Acid:
SWQFRCIDKQKEQWKDKEV*
Intron Amino Acid Position:
691

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.5
0.88
0.9
82
29.3
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
75.9
0.58
0.9
70.9
39.5
Minor 5ss
36.6
-1.5
3.4
52
45.2
Minor BPS
52.7
-0
1.7
57.06
44.5

Associated Gene:

Gene:
NADSYN1
Ensembl Gene ID:
ENSAPLG00000003062
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019982
17645374 - 17662887
17514