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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_17648893_17649339_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
17648893 - 17649339
Intron Length:
447

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTAGT
5'SS Class:
strong_major
3'SS Sequence:
CTTCCTCTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TACTTTTCATCT
Flanking Amino Acid:
IENFQLTALRSIMAAPPTAE
Intron Amino Acid Position:
565

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93
1.01
0.7
86.9
30.1
Major BPS
100
1.24
0.5
100
0
Major PPT
85.7
0.8
0.7
79.7
25.8
Minor 5ss
32
-2.1
2.8
42.5
44.3
Minor BPS
49.6
0.05
1.8
68.49
42.8

Associated Gene:

Gene:
NADSYN1
Ensembl Gene ID:
ENSAPLG00000003062
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003162
17644520 - 17662887
18368
ENSAPLT00000020060
17643781 - 17663646
19866
ENSAPLT00000019982
17645374 - 17662887
17514