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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_17649472_17650269_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
17649472 - 17650269
Intron Length:
798

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTGGTAAA
5'SS Class:
major
3'SS Sequence:
TTCTCCTGCTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTACAT
U12 Branch Point Sequence:
CATTACATAACA
Flanking Amino Acid:
LVLGSANVDESLRGYLTKYD
Intron Amino Acid Position:
521

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.6
0.6
1.2
75.3
36.2
Major BPS
73.9
0.59
1
81
30.2
Major PPT
77.3
0.61
0.9
76.5
32.1
Minor 5ss
30
-2.3
2.7
33.5
41.8
Minor BPS
58.7
0.27
1.8
70.92
40.6

Associated Gene:

Gene:
NADSYN1
Ensembl Gene ID:
ENSAPLG00000003062
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003162
17644520 - 17662887
18368
ENSAPLT00000020060
17643781 - 17663646
19866
ENSAPLT00000019982
17645374 - 17662887
17514