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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_17650377_17651831_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17650377 - 17651831
Intron Length:
1455

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGTGTTTC
5'SS Class:
strong_major
3'SS Sequence:
TTTTGCTTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTTTTTCATT
Flanking Amino Acid:
RENLALQNVQARVRMVLSYL
Intron Amino Acid Position:
486

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.8
80.1
28.5
Major BPS
100
1.24
0.5
100
0
Major PPT
85.7
0.8
0.7
81.4
30.6
Minor 5ss
45.4
-0.5
2.7
60.6
44.5
Minor BPS
67.5
0.63
1.7
86.64
33.8

Associated Gene:

Gene:
NADSYN1
Ensembl Gene ID:
ENSAPLG00000003062
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019982
17645374 - 17662887
17514
ENSAPLT00000003162
17644520 - 17662887
18368
ENSAPLT00000020060
17643781 - 17663646
19866