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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_17653959_17654127_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
17653959 - 17654127
Intron Length:
169

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGCACA
5'SS Class:
strong_major
3'SS Sequence:
TCTGTGATTTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGATGAT
U12 Branch Point Sequence:
TATTCTGTGATT
Flanking Amino Acid:
WRHHSPEEEICLGPACWLWD
Intron Amino Acid Position:
333

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.5
0.77
1
73.3
37.4
Major BPS
69.5
0.48
1.2
59.7
46.7
Major PPT
77.5
0.62
0.9
73.7
40.5
Minor 5ss
39.8
-1.1
2.8
47
42.5
Minor BPS
58.1
0.34
2
79.26
37.5

Associated Gene:

Gene:
NADSYN1
Ensembl Gene ID:
ENSAPLG00000003062
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003162
17644520 - 17662887
18368
ENSAPLT00000020060
17643781 - 17663646
19866
ENSAPLT00000019982
17645374 - 17662887
17514