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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_17654495_17655279_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17654495 - 17655279
Intron Length:
785

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAATACAT
5'SS Class:
major
3'SS Sequence:
AGCCTCTCTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTAAT
U12 Branch Point Sequence:
ATCAATCTAATG
Flanking Amino Acid:
QGSQFSLDDVEVLVATLDLE
Intron Amino Acid Position:
267

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73
0.54
1
66.2
39
Major BPS
85.7
0.89
0.8
84
22.2
Major PPT
72.8
0.51
0.9
65.1
35.8
Minor 5ss
33.8
-1.8
3.2
45.3
43.6
Minor BPS
44.3
-0.5
1.8
47.99
39.6

Associated Gene:

Gene:
NADSYN1
Ensembl Gene ID:
ENSAPLG00000003062
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019982
17645374 - 17662887
17514
ENSAPLT00000003162
17644520 - 17662887
18368
ENSAPLT00000020060
17643781 - 17663646
19866