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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_17658853_17659213_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17658853 - 17659213
Intron Length:
361

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTTCT
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTCTCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTAAG
U12 Branch Point Sequence:
TTTTCTTTTCTT
Flanking Amino Acid:
PRIIQEVTGQDTVPFGDAVL
Intron Amino Acid Position:
154

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.3
1.11
0.7
90.5
21.5
Major BPS
57.9
0.2
1.7
69.7
44.2
Major PPT
89
0.88
0.6
88.2
21.5
Minor 5ss
42.8
-0.8
2.8
59.5
45
Minor BPS
46.2
-0.2
3.6
83.31
38.3

Associated Gene:

Gene:
NADSYN1
Ensembl Gene ID:
ENSAPLG00000003062
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019982
17645374 - 17662887
17514
ENSAPLT00000003162
17644520 - 17662887
18368
ENSAPLT00000020060
17643781 - 17663646
19866