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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_17661036_17661990_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
17661036 - 17661990
Intron Length:
955

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTCTT
5'SS Class:
strong_major
3'SS Sequence:
CTTATTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TTCTTCTTATTT
Flanking Amino Acid:
VTQDIICDVGMPVMHKNVRY
Intron Amino Acid Position:
88

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.2
0.83
1
83.8
34.5
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
88.8
0.87
0.7
84.1
30.7
Minor 5ss
42.6
-0.8
3.1
63.9
40.4
Minor BPS
68.9
0.67
1.5
82.89
39.2

Associated Gene:

Gene:
NADSYN1
Ensembl Gene ID:
ENSAPLG00000003062
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020060
17643781 - 17663646
19866
ENSAPLT00000019982
17645374 - 17662887
17514
ENSAPLT00000003162
17644520 - 17662887
18368