Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_17667274_17667967_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

17667274 - 17667967

Intron Length:

694

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTACGTTAT

5'SS Class:

strong_major

3'SS Sequence:

TTTCCTGCTTTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGTTGAT

U12 Branch Point Sequence:

ACATCAGTAATG

Flanking Amino Acid:

GVQEGAVTPAGVVNKYEING

Intron Amino Acid Position:

192

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.5

0.72

76.9

34.4

Major BPS

81.2

0.78

1.1

71.4

45.1

Major PPT

79.2

0.66

0.8

77.7

31.1

Minor 5ss

40.9

-1

3.1

54.6

44.9

Minor BPS

45.6

-0.4

2.2

51.58

Associated Gene:

Gene:

DHCR7

Ensembl Gene ID:

ENSAPLG00000002980

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000034234

17659907 - 17670839

10933

ENSAPLT00000023812

17664461 - 17670839

6379

ENSAPLT00000003031

17663654 - 17670839

7186