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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_17668797_17669672_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17668797 - 17669672
Intron Length:
876

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATTTG
5'SS Class:
strong_major
3'SS Sequence:
CATTCTGTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
TGTTATTAAAGT
Flanking Amino Acid:
NSMILVNVLQGIYVLDFFWN
Intron Amino Acid Position:
332

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.9
81.2
33.8
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
79.9
0.67
0.9
76.7
37
Minor 5ss
43.2
-0.7
2.9
57.8
46.8
Minor BPS
49.3
0.02
2.1
73.23
43.7

Associated Gene:

Gene:
DHCR7
Ensembl Gene ID:
ENSAPLG00000002980
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034234
17659907 - 17670839
10933
ENSAPLT00000023812
17664461 - 17670839
6379
ENSAPLT00000003031
17663654 - 17670839
7186