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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_17669805_17670374_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17669805 - 17670374
Intron Length:
570

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAAATG
5'SS Class:
strong_major
3'SS Sequence:
TTCTGCTCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
CAGTACTGATTG
Flanking Amino Acid:
VWLPYLYTLQGLYLVYHPVQ
Intron Amino Acid Position:
376

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.1
0.78
0.9
77.9
36.7
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
77.5
0.62
0.8
69.3
36.9
Minor 5ss
36.4
-1.5
3.1
48.5
47.2
Minor BPS
42.6
-0.7
1.8
42.23
42.8

Associated Gene:

Gene:
DHCR7
Ensembl Gene ID:
ENSAPLG00000002980
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034234
17659907 - 17670839
10933
ENSAPLT00000023812
17664461 - 17670839
6379
ENSAPLT00000003031
17663654 - 17670839
7186