About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_17681349_17681797_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
17681349 - 17681797
Intron Length:
449

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTAAGCTCT
5'SS Class:
strong_major
3'SS Sequence:
TGCTGTTACACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
CTCTTTTTAATC
Flanking Amino Acid:
AAINNRQELVKYYISKGAVV
Intron Amino Acid Position:
77

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.71
1
75.2
35.7
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
70.2
0.45
1
64.5
40.6
Minor 5ss
48.2
-0.2
2.8
66.3
38.7
Minor BPS
67.9
0.54
1.2
68.66
38.1

Associated Gene:

Gene:
ZDHHC13
Ensembl Gene ID:
ENSAPLG00000002449
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002515
17680117 - 17694112
13996