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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_17683113_17684394_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17683113 - 17684394
Intron Length:
1282

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTTGT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTACACTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTCAT
U12 Branch Point Sequence:
TTCTTCTTACAC
Flanking Amino Acid:
IIAYLISKGQNIDTTDFNGQ
Intron Amino Acid Position:
152

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.4
0.9
0.9
80.5
35
Major BPS
84.8
0.86
1.1
85.7
34.9
Major PPT
71.8
0.49
0.9
71.1
33.9
Minor 5ss
48
-0.2
2.5
67.3
43.8
Minor BPS
60.1
0.3
1.7
70.75
40.8

Associated Gene:

Gene:
ZDHHC13
Ensembl Gene ID:
ENSAPLG00000002449
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002515
17680117 - 17694112
13996