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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_17686315_17686704_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17686315 - 17686704
Intron Length:
390

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATTTCG
5'SS Class:
strong_major
3'SS Sequence:
GTCATCTTAATAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
GTCATCTTAATA
Flanking Amino Acid:
RLLRIMEKHELFLLVASSLT
Intron Amino Acid Position:
270

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.5
0.81
1
74.3
37
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
66.8
0.38
1
62.1
38.6
Minor 5ss
40.6
-1.1
2.7
50.9
45.5
Minor BPS
66.1
0.5
1.3
68.23
38.5

Associated Gene:

Gene:
ZDHHC13
Ensembl Gene ID:
ENSAPLG00000002449
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002515
17680117 - 17694112
13996