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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_17686839_17687533_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
17686839 - 17687533
Intron Length:
695

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTTTGTGCA
5'SS Class:
major
3'SS Sequence:
CATATTCTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTCTTTTCATA
Flanking Amino Acid:
FLLLGTALFVRQFVGLKNLR
Intron Amino Acid Position:
314

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.1
0.59
1.2
68.9
35.7
Major BPS
100
1.24
0.5
100
0
Major PPT
76.6
0.6
0.8
73.9
36.3
Minor 5ss
35.4
-1.7
2.9
42.3
44.4
Minor BPS
57
0.21
1.7
71.66
34.9

Associated Gene:

Gene:
ZDHHC13
Ensembl Gene ID:
ENSAPLG00000002449
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002515
17680117 - 17694112
13996