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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_17687635_17688708_F

Intron Information:

Intron Rank:
10
Intron Class:
minor
Intron Phase:
1
Intron Coordinates:
17687635 - 17688708
Intron Length:
1074

Sequence Information:

Terminal Dinucleotides:
AT-AC
5'SS Sequence:
CTG|ATATCCTTT
5'SS Class:
strong_minor
3'SS Sequence:
ACCTGAATAATAC|A
3'SS Class:
strong_BPS
U2 Branch Point Sequence:
AATATAT
U12 Branch Point Sequence:
TATTCCTTAACC
Flanking Amino Acid:
SVTWFFLFLPDTTNTISEIT
Intron Amino Acid Position:
348

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
35.4
-0.9
3.4
55
44.6
Major BPS
62.6
0.31
1
59.1
37.6
Major PPT
34.3
-0.9
3.1
40.7
36.6
Minor 5ss
99
1.63
0.6
96.7
10.2
Minor BPS
91.7
1.29
0.8
92.06
26.2

Associated Gene:

Gene:
ZDHHC13
Ensembl Gene ID:
ENSAPLG00000002449
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002515
17680117 - 17694112
13996