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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_17690949_17691955_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
17690949 - 17691955
Intron Length:
1007

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGT|GTATGTATC
5'SS Class:
major
3'SS Sequence:
TGTGTCTTGTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATTAA
U12 Branch Point Sequence:
AGGTAATTAACT
Flanking Amino Acid:
SVWLLYGSLLYWSNHCSTSY
Intron Amino Acid Position:
470

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.8
0.44
1.1
70.9
39.3
Major BPS
67.7
0.44
1
58.3
38.4
Major PPT
74.2
0.55
1
73.4
41.9
Minor 5ss
48.4
-0.1
2.5
63.7
40.8
Minor BPS
57.7
0.32
1.8
73.94
42

Associated Gene:

Gene:
ZDHHC13
Ensembl Gene ID:
ENSAPLG00000002449
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002515
17680117 - 17694112
13996