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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_17692114_17693216_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17692114 - 17693216
Intron Length:
1103

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTATTT
5'SS Class:
major
3'SS Sequence:
TCCTTTCTATAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATGAT
U12 Branch Point Sequence:
AATTTATGATGT
Flanking Amino Acid:
SLWLTIQLYQIAFLGLTSHE
Intron Amino Acid Position:
523

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.9
0.61
1
76.1
33.6
Major BPS
84.6
0.86
1
74
41.2
Major PPT
69.8
0.44
1
76
31.5
Minor 5ss
50.2
0.01
2.8
73.9
42.5
Minor BPS
42.5
-0.4
2.1
61.42
42

Associated Gene:

Gene:
ZDHHC13
Ensembl Gene ID:
ENSAPLG00000002449
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002515
17680117 - 17694112
13996