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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_17693315_17693907_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
17693315 - 17693907
Intron Length:
593

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGTATT
5'SS Class:
strong_major
3'SS Sequence:
CTCTCATTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TTTCTCTCATTT
Flanking Amino Acid:
HPVSLRRTSYNLGCFQNLAD
Intron Amino Acid Position:
555

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
0.8
89.7
22.3
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
83.4
0.75
0.8
80.6
30.1
Minor 5ss
37.9
-1.4
3
51.7
39.1
Minor BPS
54.8
0.23
1.8
77.31
39.5

Associated Gene:

Gene:
ZDHHC13
Ensembl Gene ID:
ENSAPLG00000002449
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002515
17680117 - 17694112
13996