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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_17698465_17698612_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17698465 - 17698612
Intron Length:
148

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTGGGGAAT
5'SS Class:
major
3'SS Sequence:
TCTGGCTGCGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGTTAAT
U12 Branch Point Sequence:
CAGTGCTGAATG
Flanking Amino Acid:
YGGMAPQTGSTEK
Intron Amino Acid Position:
4

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.7
0.44
1.1
65.6
41.7
Major BPS
75.6
0.64
1.1
75.7
36.5
Major PPT
66.9
0.38
1
61
40.1
Minor 5ss
26.7
-2.7
3.3
30.2
43.3
Minor BPS
46.9
-0.3
2
48.97
45

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002427
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002434
17698456 - 17704763
6308